Nextflow workflow report

[agitated_cray]

Workflow execution completed successfully!
Run times
22-Dec-2021 14:11:36 - 23-Dec-2021 11:45:09 (duration: 21h 33m 34s)
  2682 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run /project/ag100pest/software/polishCLR/main.nf --primary_assembly PolishCLR_Results/Step_1/02_Purge_Dups/primary_purged.fa --alternate_assembly PolishCLR_Results/Step_1/02_Purge_Dups/haps_purged.fa --mitochondrial_assembly /project/ag100pest/Helicoverpa_zea_male/MT_Contig/Hzea_mtDNA_contig.fasta --illumina_reads '/project/ag100pest/Helicoverpa_zea_male/PolishingData/JDRP*{R1,R2}.fastq.bz2' --pacbio_reads '/project/ag100pest/Helicoverpa_zea_male/RawData/m*.subreads.bam' --species Hzea --k 21 --falcon_unzip true --step 2 -profile ceres
CPU-Hours
195.0
Launch directory
/90daydata/project/ag100pest/software/polishCLR/manuscript
Work directory
/90daydata/project/ag100pest/software/polishCLR/manuscript/work
Project directory
/project/ag100pest/software/polishCLR
Script name
main.nf
Script ID
6a819701159cb55583dae75b8b2be314
Workflow session
d1b77f5d-bcb3-4f1b-acda-39b208592919
Workflow profile
ceres
Nextflow version
version 21.04.2, build 5559 (12-07-2021 13:12 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)